miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|76843203|gb|DV134197.1|DV134197 CCGAGNNNNNNTACATCCAACAATGGCCACCGCCGCCGCCGCTACAGCCACCGGAAGAATCCAAGCAAGATTCGGATTCA
ATTTCGGAACCAAAAAAGCTCCACCACCACCCCCAAAATCACCCCCAAAGCAATCAAAATTCGGATTCAATTTCACCAAA
AAATCTCCACCACCAGCAAAAAAATCACTCCCAAAACAATCTGCCGGAGACCGTCTAGTCTGGTTCCCCGGTGCAAACCC
ACCGGAATGGCTCGACGGGACAATGATCGGAGACAGAGGGTTCGACCCGTTCGGGTTGGGGAAACCCGCGGAGTACTTGC
AATATGATTTGGATTCGTTGGACCAGAACTTGGCGAAGAATCTCGCCGGTGAAATTATCGGGACACGTGTGGAGGATGCG
ACGGTGAATCCGACGCCGTTTCAGCCGTACACGGAGGTGTTTGGGCTGCAGAGGTTTAGAGAATGTGAAGTGATTCATGG
AAGATGGGCGATGTTGGGGACTCTTGGTGCCATTGCTGTTGAAGCTCTTACTGGTGTTTCTTGGCAAGATGCTGGAAAGG
TAGAATTAGTTGAAGGGTCATCCTACCTTGGGCAGCCATTGCCATTTAGCTTGACAACATTGATATGGATAGAGGTTCTA
GTAATTGGGTACATAGAGTTTCAAAGGAATGCTGAACTTGAACCNNAAAAAAGGCTATATCCAGGCGGGTATTTTGACCC
ACTCGGGCTGGCTTCTGATCCTG




Most similar to sp|Q9S7W1|CB4C_ARATH

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|Q9S7W1|CB4C_ARATH Chlorophyll a-b binding protein CP29.3,
           chloroplastic OS=Arabidopsis thaliana GN=LHCB4.3 PE=1
           SV=1
          Length = 276

 Score =  344 bits (882), Expect = 4e-94
 Identities = 166/230 (72%), Positives = 182/230 (79%)
 Frame = +2

Query: 53  GRIQARFGFNFGTXXXXXXXXXXXXXXXXFGFNFTXXXXXXXXXXXXXXXAGDRLVWFPG 232
           GR+QARFGF+FG                                       GDRLVWFPG
Sbjct: 25  GRVQARFGFSFGKKKPAPPPKKSRQVQDD----------------------GDRLVWFPG 62

Query: 233 ANPPEWLDGTMIGDRGFDPFGLGKPAEYLQYDLDSLDQNLAKNLAGEIIGTRVEDATVNP 412
           ANPPEWLDG+MIGDRGFDPFGLGKPAEYLQYD D LDQNLAKN+AG+IIG   E + + P
Sbjct: 63  ANPPEWLDGSMIGDRGFDPFGLGKPAEYLQYDFDGLDQNLAKNVAGDIIGIIQESSEIKP 122

Query: 413 TPFQPYTEVFGLQRFRECEVIHGRWAMLGTLGAIAVEALTGVSWQDAGKVELVEGSSYLG 592
           TPFQPYTEVFG+QRFRECE+IHGRWAMLGTLGAIAVEALTG++WQDAGKVELVEGSSYLG
Sbjct: 123 TPFQPYTEVFGIQRFRECELIHGRWAMLGTLGAIAVEALTGIAWQDAGKVELVEGSSYLG 182

Query: 593 QPLPFSLTTLIWIEVLVIGYIEFQRNAELEPXKRLYPGGYFDPLGLASDP 742
           QPLPFSLTTLIWIEVLV+GYIEFQRN+EL+P KR+YPGGYFDPLGLA+DP
Sbjct: 183 QPLPFSLTTLIWIEVLVVGYIEFQRNSELDPEKRIYPGGYFDPLGLAADP 232